Genoogle BETA 0.78

Date: 07/01/2009.

Download link: http://svn.pih.bio.br/genoogle-packages/releases/0.78/

Main changes

• RNA Sequences Support.
• Ignoring invalid sequences during the data bank formatting process.

Users changes

Now it is possible to use RNA fasta sequences. It is necessary to inform at the type attribute at the split-databank, that the fasta inputs file are RNA sequences:

   <genoogle:split-databanks name="rna_db" path="files/fasta" mask="1101100110011011" type="RNA" number-of-sub-databanks="1" sub-sequence-length="10" low-complexity-filter="5">
      <genoogle:databank name="rna_fasta" path="rna_fasta_file.rna" />
   </genoogle:split-databanks>

If the "type" is not set, genoogle will consider that the input are DNA sequences. For while, it is only possible to search RNA sequences in the RNA data banks, and DNA sequences in the DNA data banks.

Another change, it is during the formatting data bank process. If some sequences has invalid characters, this sequence will be ignored and the formatting process will continue without it.

It is all. Please use this Group to send questions, suggestions and bugs reports.

Felipe Albrecht